FICHA · AUR

hmmer2

Profile hidden Markov models (HMMs) for database searching using consensus sequences

  • scientific-tool
  • CLI
  • TERMINAL
  • BIOINFORMATICS
  • Launchable
  • Runs in terminal
official+codex · reviewed · Jun 1, 2026 description in en

Description

Older HMMER 2 workflows can be preserved for bioinformatics pipelines that still depend on that generation of tools.

It is useful for reproducing legacy analyses, comparing old results, or maintaining pipelines that have not moved to newer HMMER versions. Scientific outputs should be documented carefully because algorithms, formats, and thresholds may differ from modern releases.

How to run

hmmer

Commands: hmmer

Permissions

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