FICHA · AUR

bioawk

BWK awk modified for biological data

  • bioinformatics-text-cli
  • CLI
  • SCIENCE
  • DATA
  • Launchable
  • Runs in terminal
official+codex · reviewed · May 30, 2026 description in en

Description

Biological sequence data can be filtered and transformed with an awk variant adapted for common bioinformatics formats. It is useful for researchers processing FASTA, FASTQ, BED, SAM, or similar text data.

Bioinformatics command pipelines can silently alter datasets if fields or formats are misunderstood. Keep raw data and document commands.

How to run

bioawk

Commands: bioawk

Permissions

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