FICHA · AUR

bedtools

powerful toolset for genome arithmetic

  • bioinformatics-toolkit
  • CLI
  • SCIENCE
  • Launchable
  • Runs in terminal
official+codex · reviewed · May 30, 2026 description in en

Description

Genomic intervals can be compared, intersected, merged, filtered, and transformed from the command line. It is useful for bioinformatics users working with BED, BAM, VCF, and related genomics files.

Coordinate mistakes can change scientific conclusions. Document genome builds, file formats, and command parameters for reproducible analysis.

How to run

bedtools

Commands: bedtools

Permissions

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