FICHA · AUR

bcalm-git

constructs compacted de Bruijn graph from sequencing data

  • bioinformatics-cli
  • CLI
  • SCIENCE
  • Launchable
  • Runs in terminal
official+codex · reviewed · May 30, 2026 description in en

Description

Sequencing reads can be transformed into compacted de Bruijn graphs for genome assembly and analysis. It is useful for bioinformatics researchers working with large sequencing datasets.

Graph construction can be memory-intensive and depends on parameters such as k-mer size. Document settings and protect genetic datasets if they contain sensitive information.

How to run

bcalm

Commands: bcalm

Permissions

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