FICHA · DEBIAN

bamclipper

Remove gene-specific primer sequences from SAM/BAM alignments

AI-proposed · claude code · not human-reviewed · draft · May 24, 2026 description in en

Description

Remove gene-specific primer sequences from SAM/BAM alignments of PCR amplicons by soft-clipping.

bamclipper.sh soft-clips gene-specific primers from BAM alignment file based on genomic coordinates of primer pairs in BEDPE format.

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