FICHA · AUR

abyss

Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler

  • scientific-computing-tool
  • CLI
  • BIOINFORMATICS
  • GENOMICS
  • Launchable
  • Runs in terminal
  • Same app · 2 sources
official+codex · reviewed · May 30, 2026 description in en

Description

Short DNA sequencing reads can be assembled de novo in parallel workflows. It is useful for bioinformatics researchers working with paired-end sequencing data and genome assembly tasks.

Genome assembly can require large memory, CPU time, and careful parameter choices. Results should be validated with appropriate biological and statistical checks.

How to run

abyss-pe

Commands: abyss-pe

Permissions

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